@ ad123164 - Yes they will
- http://www.cic.gc.ca/english/helpcentre/answer.asp?q=619&t=4-
My first application submission for PR was returned for incorrect mode of payment (I used the wrong receipt form) - so I had to pay a 2nd time for the resubmission, and request for refund as in the link above to get my 1st payment. Check comes in a few weeks later....
@ lalabaul - as mentioned in one of the threads I sent in my previous post the opinion is Payer Information is only relevant in cases of refunds. What is important right now, is in the absence of a UCI or File Application No. tying or linking your receipt of payment of processing fees to your submitted application, you need to identify the payment as for your application (processing fees for your application). Enclosing the receipt with your submission is one way, another is as advised by ad123464 or as others who have paid online have done - put your name in the payer information in the receipt - anyway there are "no clear instructions" in the receipt form whose name should be placed there. Right now, the only printed information tying the two (application and payment) together will be the principal applicant's name.
/all the best....