Id consider re-sending the court cert then with a proper explanation as to how in your system that is the one and only recognized civil/legal document.Well the system is you go to the court and the person that married us was a judge. And then he gave us an official Jordanian marriage certificate. The Jordanian law recongnizes this as a civil and religious marriage at the same time.
Please keep in mind that I have not been through what you are in, and I am only giving you my "opinion".
Good Luck!