See if you want to submit her passport in canada then yes you can do it but i will prefer not to do it as it will increase processing time for your pr application as you will have to inform ircc by raising webform which will take 20-30 days so i will suggest you to delay her travel if you want...
Can you share your refugee pr application timeline i also applied on same date as you did you received any temporary number for your file please tell ???
The reply usually takes 2 weeks i think you should ask for your application number and uci from lawyer and should contact it by yourself because i have seen lawyer are too lazy to tell you same thing happened in my case