It is possible that there are indeed referrals to update the clearances. More likely the call centre was parroting an essentially-no-problem-just-wait response to get callers off the line more quickly.
ATIP and call centre calls are generally useless exercises UNLESS there is a particular need or reason for them . . . and indeed, there are many who have real issues and real questions and these tools are useful for them, which is why it is so UNFAIR for applicants who have no real issues, no real questions, who are just anxious for the process to move forward, to bog down the call centre making it more difficult for those who have real questions to get through.
Unless you know there is a reason to worry, odds are very good there is no reason to worry. Like tens of thousands, literally TENS of THOUSANDS of others, all you need to do is WAIT, WAIT and WATCH for NOTICE from IRCC, and respond accordingly. Notice could come next week, next month, or it might take a long while, or even a very long while.
Efficiency standards:
The accusation that IRCC is inefficiently processing citizenship applications is all too casually thrown around with little or no evidence to support it.
Efficiency is a relative concept dependent on many factors, but in regards which cost/effort expended per outcome result looms far more importantly than the timeline. The most efficient process will expend the least resources to accomplish the best results. Measuring best results depends on priorities. Accuracy and fairness are undoubtedly far, far more important in the assessment of citizenship processing than HOW LONG it takes. Indeed, how long it takes probably has a relatively low priority compared to other markers or measures.
Processing citizenship applications is not akin to calculating the number of widgets produced per hour on an assembly line. In particular, a quantity/time measure is far, far less important than a quality (especially in terms of facilitating a positive result for those who are qualified and a negative outcome for those who are not) versus cost (human and financial resources) calculation.
Except for the narcissistic individual, for whom the timeline looms disproportionately important, his or her timeline in particular. There is a lot of "Hey, I am qualified, grant me citizenship soon" attitude rampant in the forum. I get it that people are anxious. For some there are real dollars to be counted, especially among those for whom a Canadian passport can help advance their career, and the sooner the better. But individual priorities are not necessarily concurrent with government objectives.
While I am not privy to the particular mental state of those who manage the citizenship application process at IRCC, my guess is that the timeline is of secondary importance. As I have said elsewhere, this is a process which will result in the granting of status for a LIFETIME, potentially a HALF CENTURY or more. How long it takes is important to individuals, yes, no doubt, but in the overall scheme of things there are other more pressing, more important priorities.
That is, while time is a factor in assessing the efficiency of a process, for some processes there are other far more important factors, and I'd submit especially a process like granting status, citizenship, FOR LIFE, is one.
Bottom-line: it all adds up to waiting.
Explain to me how quality is achieved by having a file that is complete sit in a pile somewhere waiting for an agent to pick up and grant the applicant an oath schedule.. We are not talking about a file that needs any further attention from the agent so your argument about making sure you are producing quality assessment is not valid in this case. The assessment has been complete, the agent or whoever had the file before already spent the quality time making sure this is a quality applicant. in other words, the process where you need a human assessing the application is COMPLETE.
Again, i get it, we all have to wait, but if there is a process that will save an agent even 5 minutes/application, i'd say it's worth looking into. Those 5 minutes multiplied by whatever number of application per day the agent goes through a day adds up to a lot. This frees up time for applications that need to be looked at more thoroughly hence making sure IRCC is producing quality applications.