That's really unfortunate but from IRCC website, I believe it is likely for the file to be rejected, returned but hopefully they might request for it as ADR. If this was me I would be proactive and try communicating with them beforehand and see the best way to resolve such issue.
Worst case scenario they would hold your file and work on it at their own pace meaning, your file might be delayed. Just pray those are the only issues with it. Sorry about that though.